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  Topic: For the love of Avocationist, A whole thread for some ID evidence< Next Oldest | Next Newest >  
Chris Hyland



Posts: 705
Joined: Jan. 2006

(Permalink) Posted: Feb. 02 2007,04:18   

Quote
you might want to check up on the latest efforts by the "truth in science" gang in the UK.
The government basically told them they weren't allowed to show unlocking the mystery of life in science classes, and to take it up with the scientists.

  
Darth Robo



Posts: 148
Joined: Aug. 2006

(Permalink) Posted: Feb. 02 2007,05:07   

"I was a tad concerned about a year ago when I thought that religious apologetics might get taught in science lessons. I do not see that as a danger now. I couldn't care less if ID was taught in schools providing it was in religious lessons rather than science."

I'm a little worried that they would use it as a stepping stone to gain public support and then try to force it in science class a few years later.  Remember, ID is not religion, it's a con.  So it shouln't be taught at all.  It was designed to appear scientific to the laymen and that's the problem.  Also, the Vardy schools teach creationism already.  

We unfortunately don't have the protection of seperation of church and state in the UK.  I know that our religious classes have not stopped us from teaching good science in general, but if public support grows for 'teach the controversy', it could be a problem.  It's easy for us to look at the USA and think we could never be that daft to even consider ID as science, but I would argue that fundieism in the UK is on the rise.

--------------
"Commentary: How would you like to be the wholly-owned servant to an organic meatbag? It's demeaning! If, uh, you weren't one yourself, I mean..."

  
Stephen Elliott



Posts: 1776
Joined: Oct. 2005

(Permalink) Posted: Feb. 02 2007,12:48   

Quote (Darth Robo @ Feb. 02 2007,05:07)
"I was a tad concerned about a year ago when I thought that religious apologetics might get taught in science lessons. I do not see that as a danger now. I couldn't care less if ID was taught in schools providing it was in religious lessons rather than science."

I'm a little worried that they would use it as a stepping stone to gain public support and then try to force it in science class a few years later.  Remember, ID is not religion, it's a con.  So it shouln't be taught at all.  It was designed to appear scientific to the laymen and that's the problem.  Also, the Vardy schools teach creationism already.  

We unfortunately don't have the protection of seperation of church and state in the UK.  I know that our religious classes have not stopped us from teaching good science in general, but if public support grows for 'teach the controversy', it could be a problem.  It's easy for us to look at the USA and think we could never be that daft to even consider ID as science, but I would argue that fundieism in the UK is on the rise.

I am not as worried as you are. ID is so self evidently "full of shit" that it is no threat. The recorded history of ID is there for all to see. Blatant lies and deception.

  
GCT



Posts: 1001
Joined: Aug. 2005

(Permalink) Posted: Feb. 02 2007,15:46   

Quote (demallien @ Feb. 02 2007,03:00)
Quote
It was also a New Zealand issue. As a leader in the field of biology education - we took great interest in the Dover Case. It set down boundaries between science and religion. If memory serves me right, Australia took an interest in it relating to law.

Here


Are you trying to tell us that New Zealand is at moderate risk of adopting ID in the school classroom in the near future?!?!

I can't see any other way that Dover would be of interest to a country.  But maybe I'm missing something.

I would take it seriously that this country has ID/Creationist problems.  If we start raising generations of ignorant individuals that rely on Biblical teaching instead of reality, it could have repercussions for the whole world.  What happens when some fundy president decides that he's going to start armageddon?  That's a worst case scenario, but there are other considerations, like a loss of US research effort and funding and how that would affect the scientific progress of the world.  Yes, lots of other countries do great work, but there's quite a bit going on here that the world would miss.

  
avocationist



Posts: 173
Joined: Feb. 2006

(Permalink) Posted: Feb. 02 2007,18:10   

Creeky,

 
Quote
Me-That you can't perceive it means little. Can you hear a dog whistle? Can you see xrays?

You-You might want to save yourself the embarrassment and not post drivel like this.
Why is it drivel? Someone responds to the idea of other dimensions as if they were a magical idea, and I point out that if they exist, they are invisible to us. As you mentioned yourself, it is a part of string theory. If the string theorists are right, then those other dimensions are the bedrock of what we call reality, and yet we can't perceive those dimensions. We already know that there is a world of the unseen - life forms, molecules, atoms. We know that we can perceive but a small band of the electromagnetic spectrum, and yet people perist in always thinking that the latest discovery is the final and last. That we have already uncovered so much of the unseen, should instead have the opposite effect.

Mike DSS,

 
Quote
Yeesh.  It sucks being you.  :O

SORRY!  Sorry.  Shouldn't say things like that.
Sometimes it does!I don't even know how to manage the TV set upstairs or the DVD player.

 
Quote
AND you realized that this function COULD be improved with further "evolution"
I do not realize that. That is the supposition of the author of the bit I quoted. I included it to show that the author is not antievolution.

 
Quote
The results found two NEW bacterial strains (PAO5501 and PAO5502) where PAO5502 was actually derived from an isolated solution of PAO5501.
I'm not clear on the relevance of 5501 and it what way it was a different strain from the original -1.

 
Quote
but in this article they stated they didn't know how the bacteria aquired their ability. If we don't know that, I don't think we can assess the situation.
I think that is a bit disingenuous to the work done and support given to the "educated guess" of the experimenters.
I am not sure why you say so. If we don't know how it happens, how can we talk about whether random processes are adequate? I don't disagree at all with their educated guess that 'the basic mechanisms acting during environmental stress are involved in this adaptation.'  

You quote Spetner:
"there are two altered enzymes, not just one.
Both these enzymes are needed
Neither of these enzymes alone is effective."

But did you undersand his point that he finds two alterations mathematically suspect, i.e., improbable?

I do not understand your point here:
 
Quote
So Spetner is NOT aware of the enzymes in the NEW strain of PAO5502 that eat nylon. I wonder how many point mutations and changed amino acids are in the PAO5502 bug?
Are you saying he was talking about a different organsm, and should have been aware also of this one? The bug he discussed did survive on nylon.

Quote
Spetner cannot make these claims [probability of success] without further analyzing the mutational effect of the NEW strain of PAO5502 which was produced in only 3 months (maximum, maybe faster) from PAO1.


What was different about this case - fewer steps?

Quote
BUT, we saw in the experiment that PAO5502 was a new strain only AFTER PAO5501 was isolated and the conditions changed. Therefore, might it be possible that PAO1 mutates to form PAO5501 which has enzyme 1 developed but not enzyme 2.  THEN PAO5501 mutates to form PAO5502 which now has both enzyme 1 AND enzyme 2.
Of course it might be possible - but is it the case? Do we know that 5501 had the first enzyme? And if it did, what contribution did it have so as to preserve it?

 
Quote
Is this pathway a possiblility?  And shouldn't Spetner examine the development of enzyme 1 instead of discarding it with a non-sequitor?
It isn't that he dismissed it. He just concentrated on the probability of the other enzyme, and then mentions that the existence of the need for two enzymes and more steps decreases the probability further.

 
Quote
Now, why should there be a built-in capability to metabolize nylon, which did not exist until 1937 or so? The answer is there shouldn't be. But there could have been a built-in capability to metabolize some other substrate. Kinoshita et al. (1981) tested enzyme 2 against 50 possible substrates and found no activity, but that does not mean that it doesn't have activity on some substrate not tested. The activity of enzyme 2 was small, but enabled the bacteria to metabolize the nylon waste.

And we finish with an argument from personal increduality.  Without supporting evidence on WHY the increduality is even valid.
I would not call this an argument from Personal Incredulity (blessed be It's name) but that he thinks bugs are already prewired to deal with environmental stressors such as the natural penicillin that occurs in bread mold.
 
Quote

Avo,
Are you referring to the second-to-last paragraph in the nylon bug article where it states...  
Not directly, but rather from my memory of what I have read in a few different places about organisms being able to turn on a high mutation rate under certain conditions and which apply only to certain parts of the genome, and which gets turned off again when appropriate. And that, really, is the only point I had about all this. That it is a controlled skill which directs the mutations in these cases.

Demallion,

 
Quote
Quote (avocationist @ Jan. 29 2007,14:09)
It (rapid mutation) gets turned on in response to the environment, is confined to speific loci in the genome, and is turned off when it's job is done. The mutations which occur under those conditions are random. Thus it took (if I understood the article) 3 months to produce the nylon eating mutation(s) but apparently that was not the only time it occurred. Spetner mentions it being discovered accidentally 30 years after nylon was invented.
***********
Ahhh, OK, there's the disconnect! For you, God is in there fiddling with the mutations that occur so that our bacteria can adapt to it's new environment.


Well wow and double wow. I mean, where did you ever come up with that? How can you just make up stuff that is so completely at odds with everything I said? Are you that desperate to have me say what you think a 'creationist' would say?

 
Quote
This leads me to ask you if you consider God to be completely incompetent?  Because I don't see any other justification for all of the other mutations that are observed in the experiment, but which don't aid in the task of adapting to the environment, if it's God that's responable. Remember the "silent" point mutations that were observed?


I mean, how hard is this? I responded to another poster's misunderstanding of what I wrote, I clarified that the mutations are random. The organism turns up mutations somehow, in what is probably a random search for solutions. Faced with certain stressors, it turns up mutations in certain areas of the genome,  and when a solution is found, turns it off again.

Serendipity,

 
Quote
Anyway, heading towards a more reductionist view (it seems) how would Planck and Classical Quantum (Gauge Field) be divided into smaller microstats?
could you clarify your question?

Cedric,

You ask for my scientific arguments for ID, and you insist that unless the game is played on your terms, I can be dismissed. But I have answered you by telling what books and papers I have read, and said I find their arguments tenable. I also said I find the arguments about information buildup and IC particularly strong. For you to dismiss Denton's arguments in Nature's Destiny and Crisis as unscientific is idiotic. If all you guys can come up with is that the counterarguments to evolution are not science, then you really are playing games.
*******
I am VERY dismayed by the level of hatred expressed by most of the posters here. I was going to use the word hostility, but it isn't adequate. You have quite convined me that you are fundamentalists. Numbers of comments show that the poster considers it just fine to dismiss other human beings based upon their prejudice, and that they do not deserve civil treatment. This means that you are unable to hear what they say, and the constant assumptions and misunderstandings of my many plain statements mean that my words are just piss in the wind here. There is little point in talking to people who can't listen. And I do want to emphasize the word 'can't.'

You guys seriously believe that those who don't agree with you are dishonest, and you use words such as nutters and the insane so that you can keep it up - the ability to completely dismiss other points of view by dehumanizing those who hold them. Please tell me how you are different from an Islamic fundamentalist who wants to engage in Jihad with the infidels. Or the Christian explorers of yore who killed and abused the natives who were, after all, destined for ####? And if I had tried to point out to them the error of their ways - could they hear it?

This means you have isolated yourselves in a mental world of your making.

THERE IS NO DIFFERENCE! And I know you can't hear me, can't believe me, can't examine yourselves.

I don't have any hope that more than a slight amount of real progress can be had in a discussion like this. People are not going to change, generally, but what does interest me is the patterns I see in human beings, and how it matters little what position you take, but that the content of your character determines how you behave within that position.

Just look at this:

 
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Creationists are every single one to the last drop COMPLETELY AND UTERLY INSANE and are no different to the 9/11 bombers...they believe the biggest lie ever told.

 
Quote
Anyone who thinks that being polite to a Theofacist will stop them, is living in fantasy land.



I am shocked, and even frightened by this level of hatred. There is nothing to which such a person would not stoop. This is the seed of violence. k.e. has given us a picture of his inner world, and it is not a decent place. k.e. apparently believes that if you believe in God you are a theofascist. That would include Wesley, apparently. And if that is not what he believes, then he has some nerve calling me a theofascist. If anyone would call me a theofascist then they have not seen a word I have said, and have made up an opinion out of pure fantasy. I don't appreciate it, it is cetainly dishonest, and it indicates a mind that is so tied up with preconceptions that you just can't get into it's smooth, billard ball surface.

I don't mind the F word near as much as this, and I would overlook some of Lenny's nastiness if what he had to say contained any substance. It doesn't. His posts are downright silly.

But generally, it is hard to overlook nastiness, because it is draining. I don't live that way. It's like if you had some relative who asked you to take her in during some crisis, and she pulls her world into your life. Her ex-husband comes and knocks her around, there are fights and screaming, glasses get thrown, police arrive. Drug dealing boyfriends spend the night, she drinks and gets into fights and cries, etc, etc. I just wouldn't want something like that in my house.

I find it best to distance myself from people who don't know how else to live but in extremes of useless emotion.

The level of emotionality expressed here is way beyond what it should be.

  
"Rev Dr" Lenny Flank



Posts: 2560
Joined: Feb. 2005

(Permalink) Posted: Feb. 02 2007,18:29   

Avo, given that (as you acknowledged yourself) you don't know anything you are talking about, why should anyone here give a flying fig what you think?

Sorry if that question is impolite.

--------------
Editor, Red and Black Publishers
www.RedandBlackPublishers.com

  
avocationist



Posts: 173
Joined: Feb. 2006

(Permalink) Posted: Feb. 02 2007,18:37   

Chris,

Quote
My theory of intelligent design checklist goes:

1. How old is the Earth?
2. Did all species:
 b. All descended from a smaller number of species(ie kinds) (goto 3)
 c. All descended from a common ancestor(goto 5)

3. If the earth is old, how does special creation better explain the nested heirachies found in nature than the idea that species evolved from a common ancestor with guidance from an intelligent designer.(goto 5)

4. If the Earth is young, how did a small number of species evolve into all those that currently exist in a few thousand years (taking into account extinct fossil species).(goto 12)

5. Assumiung some evolution took place did the designer:
 a. Act periodically to add information
 b. Set life off with all the information already contained in the genomes

6. If information was 'frontloaded' into genomes what did it look like in ancient organisms before it was used, and how did it avoid being degraded by mutation

7. What triggered the release of new information

8. What mechanism did the organism use to detect the trigger

9. What mechanism did the organism use to activate the new information

10. What evidence shows that these mechanisms have been in operation

11. If theses mechanisms are unknown what experiments could be performed to determine them?(goto 13)

12. Assuming the desinger intervened to input new information how could this be tested scientifically? Assume that the theory of evolution and common descent have been disproven.

13. Assuming the theory of evolution has been disproven, what discoveries could falsify your mechanisms, idea of common descent, and age of the earth.

You can assume for all of these questions that the theory of evolution has been disproven.

There may be more quesitons, but you need answers to all of them before you can claim there is a theory of ID, let alone that it is better than the theory of evolution.


Plenty of good questions. Where I disagree with you is that they have to be answered before anyone can approach origins with other than mindless chance as the assumption. It is no more logical, in the face of our ignorance, to have a preset notion of mindlessness at the bottom of reality, than mind. All other things being equal. But are they equal. And that is the question. What I can say, in regard to your several questions, is to repeat that trying to decode life, what it is and how it works, and it's history, turns out to be a really hard, and really big and deep question. Slamming and sneering because one faction has used more imagination to cement together a coherent-appearing theory just slows things down. Better to hang loose and not be motivated by inner feelings of threat. Whatever will be will be, whatever is true is true.

For all will be well, and all will be well, and all manner of things will be well.

But hey, Davison and others have made some attempt at getting started on a few of them.

Again, I don't disbelieve in evolution, just don't think it happened in an NDE way. That is why I say life unfolded.

  
stevestory



Posts: 13407
Joined: Oct. 2005

(Permalink) Posted: Feb. 02 2007,18:48   

Quote (demallien @ Feb. 01 2007,23:50)
(do we have lurker stats for this board SteveStory?),

There are a couple dozen people who comment regularly here. 50 or so who comment occasionally. A few hundred who routinely lurk under registered accounts, and thousands who stop by occasionally.

   
GCT



Posts: 1001
Joined: Aug. 2005

(Permalink) Posted: Feb. 02 2007,18:50   

Quote (avocationist @ Feb. 02 2007,19:10)
If all you guys can come up with is that the counterarguments to evolution are not science, then you really are playing games.

Quote
I am VERY dismayed by the level of hatred expressed by most of the posters here. I was going to use the word hostility, but it isn't adequate.


Sorry honey, but it ain't hatred.

Quote
For you to dismiss Denton's arguments in Nature's Destiny and Crisis as unscientific is idiotic.


Quote
You have quite convined me that you are fundamentalists.


Quote
There is little point in talking to people who can't listen. And I do want to emphasize the word 'can't.'


Quote
You guys seriously believe that those who don't agree with you are dishonest....If anyone would call me a theofascist then they have not seen a word I have said, and have made up an opinion out of pure fantasy. I don't appreciate it, it is cetainly dishonest, and it indicates a mind that is so tied up with preconceptions that you just can't get into it's smooth, billard ball surface.


I just love it when someone chides you for making personal attacks by making personal attacks.  This is the person that called me a Simpleton when I challenged her assertion

linky

  
stevestory



Posts: 13407
Joined: Oct. 2005

(Permalink) Posted: Feb. 02 2007,18:58   

Quote
Posted: Feb. 02 2007,19:10

Please tell me how you are different from an Islamic fundamentalist who wants to engage in Jihad with the infidels. Or the Christian explorers of yore who killed and abused the natives who were, after all, destined for ####?


If this post hadn't had so much substance to it, it would have gotten moved to the Bathroom Wall. The next such 'how are you any different from the following murderers' type post gets the boot.

   
GCT



Posts: 1001
Joined: Aug. 2005

(Permalink) Posted: Feb. 02 2007,19:01   

Quote (stevestory @ Feb. 02 2007,19:58)
Quote
Posted: Feb. 02 2007,19:10

Please tell me how you are different from an Islamic fundamentalist who wants to engage in Jihad with the infidels. Or the Christian explorers of yore who killed and abused the natives who were, after all, destined for ####?


If this post hadn't had so much substance to it, it would have gotten moved to the Bathroom Wall. The next such 'how are you any different from the following murderers' type post gets the boot.

Substance?

  
Fractatious



Posts: 103
Joined: May 2006

(Permalink) Posted: Feb. 02 2007,19:26   

Hello, Avocationist..
Quote
could you clarify your question?

I honestly have forgotten what it specifically related too except some vague memory of "beyond quantum". That being said (and my being rather lazy at the moment to go back through the thread to recheck) - is there anything smaller than quanta?

Frac aka Serendipity.

  
deadman_932



Posts: 3094
Joined: May 2006

(Permalink) Posted: Feb. 02 2007,19:33   

I am VERY dismayed by the level of hatred expressed certain posters -- not to mention the hyperbole, the overwrought melodramatic generalizations, the instant identification with the least applicable statements.

To use a comment directed at creationist/fundamentalists to launch into a venom-and-smelling-salts-laced diatribe against posters in general is horrifying. Being of Native American extraction, I was shocked beyond all possible imagination at  the comparison of sweet, kindly people here and the Krazed Konquistador Killers of the past.

I wept when I heard this terrifying level of cruel and murderous dehumanizing generalization that spewed forth in a raging manic diatribe --  I am still crying as I imagine the bulging eyes of those that post such monstrous things, just because people ask for ...evidence *gasp*.

I have no doubts that the underlying motive is some kind of desire to bring violent reprisals on those who disagree as the true demonic perpetrators hide behind  the thin disguise of victimhood.

I am afraid now-- afraid for the well-being of every single human being on the planet because I have seen the TRUE face of evil, and it is ...posters like you and me...typing, typing typing their bloody screeds to inflame the souls of billions and bring about ARMAGEDDON!!!

Parodies done cheap.

--------------
AtBC Award for Thoroughness in the Face of Creationism

  
"Rev Dr" Lenny Flank



Posts: 2560
Joined: Feb. 2005

(Permalink) Posted: Feb. 02 2007,19:51   

Quote (avocationist @ Feb. 02 2007,18:37)
But hey, Davison and others have made some attempt at getting started on a few of them.

Davison?

JOHN Davison?

John *A* Davison ?????

(shakes head, pulls own hair)  Oh, puh-leeeeeeeeeeeeeeeze.

No WONDER everyone thinks you're nutty.


Sorry if that is impolite.

--------------
Editor, Red and Black Publishers
www.RedandBlackPublishers.com

  
"Rev Dr" Lenny Flank



Posts: 2560
Joined: Feb. 2005

(Permalink) Posted: Feb. 02 2007,19:55   

Quote (avocationist @ Feb. 02 2007,18:37)
Again, I don't disbelieve in evolution, just don't think it happened in an NDE way. That is why I say life unfolded.

I see.  

And science should give a flying fig what you think . . . um . . . why, again . . . . ?

--------------
Editor, Red and Black Publishers
www.RedandBlackPublishers.com

  
stevestory



Posts: 13407
Joined: Oct. 2005

(Permalink) Posted: Feb. 02 2007,20:18   



Leonard your posts have become tiresome.

   
k.e



Posts: 1948
Joined: Mar. 2006

(Permalink) Posted: Feb. 02 2007,20:23   

deadman:
Quote
...I am still crying as I imagine the bulging eyes of those that post such monstrous things, just because people ask for ...evidence *gasp*.



Well .....gerbils to you.

--------------
The conservative has but little to fear from the man whose reason is the servant of his passions, but let him beware of him in whom reason has become the greatest and most terrible of the passions.These are the wreckers of outworn empires and civilisations, doubters, disintegrators, deicides.Haldane

   
creeky belly



Posts: 205
Joined: June 2006

(Permalink) Posted: Feb. 02 2007,20:44   

Quote
Why is it drivel? Someone responds to the idea of other dimensions as if they were a magical idea, and I point out that if they exist, they are invisible to us. As you mentioned yourself, it is a part of string theory. If the string theorists are right, then those other dimensions are the bedrock of what we call reality, and yet we can't perceive those dimensions. We already know that there is a world of the unseen - life forms, molecules, atoms. We know that we can perceive but a small band of the electromagnetic spectrum, and yet people perist in always thinking that the latest discovery is the final and last. That we have already uncovered so much of the unseen, should instead have the opposite effect.


We have ways of measuring these things, verifying empirically that they exist. That human beings can't see X-rays or hear dog whistles, is inconsequential since we can construct devices that measure pressure or react when exposed to x-rays which produce observations that we can understand/perceive. String theory is no different. If string theory is correct, then there are certain things that we should observe, non-trivially, that would confirm the basic tenants of the theory (Lorentz invariance, hopefully the escaping graviton, etc). We can reconstruct data that supports the theory without being able to sense it directly.  If God exists in some other dimension, then He too must be able to act in a non-trivially way.
Judging from the last sentence you wrote, again, you should probably save yourself the embarrassment, if that's really how you think scientists view the world. We have at least 10 experiments coming in the next decade, one of which I'm a part of, that are re-measuring parts of the EM spectrum in our universe(from Gamma-rays to Radio). They've all been measured before, but breakthroughs in technology and theory have driven us to peer deeper and further than ever before. To say that the scientific community thinks that the most recent experiment is the final tell-all displays great ignorance of the discipline of science and the current state of science research. At this point I will wish you good luck in your philosophical quest, I respectfully disagree with your position, and hope you spend some time reading about real science instead of what you think science is.

  
deadman_932



Posts: 3094
Joined: May 2006

(Permalink) Posted: Feb. 02 2007,20:55   

I think it is accurate to say, without exaggeration, that no being has ever been exposed to such emasculating, dehumanizing mockery as I was when not only was I forced to read k.e say "gerbils" but I was then assaulted by the terrifying visage of Dieter.

I am crying as I write this because this is the same Dieter whose demonic posturings and contortions are shown to millions of callow youths as he prances and capers like Satan himself across the graves of countless innocents.

I am crying because my shaking fear now knows no bounds since others have seen fit to torture my senses with their pixels of furious hate.

I am crying because now mankind itself is endangered.

I am crying because now my life has lost all meaning and I stand at the precipice of madness, staring into the dark abyss of nihilistic suicide.

I HOPE YOU'RE HAPPY.

--------------
AtBC Award for Thoroughness in the Face of Creationism

  
Mike PSS



Posts: 428
Joined: Sep. 2006

(Permalink) Posted: Feb. 02 2007,22:42   

[quote=avocationist,Feb. 02 2007,19:10]Mike DSS,[/quote]
It's Mike PSS
Project
Steve
Sibling

My brother is on the list at Project Steve at NCSE.
I'm only a lowly BSc. of Chemical Engineering so I guess I can't join "Project Mike" when it gets started (hopefully never).

Also, here's the papers were talking about.
Nylon Bug paper I referenced.
Spetner's Objections to nylon bugs.
 
Quote
 
Quote
The results found two NEW bacterial strains (PAO5501 and PAO5502) where PAO5502 was actually derived from an isolated solution of PAO5501.
I'm not clear on the relevance of 5501 and in what way it was a different strain from the original -1.
Well, now we would have to get into the chemical details of why there is a two step process for a bug to eat nylon.  Each step has distinct products.  In simple terms suffice it to say that the experimenters created an environment where a bug that produced the first product of nylon digestion would thrive (they called this bug PAO5501) whereas the PAO1 bug would starve.  The experimenters then took this PAO5501 bug and placed it into an environment that only a bug that produced the second product of nylon digestion would thrive (they called THIS bug PAO5502).  So they showed that two seperate mutations were needed but they "created" these mutations in the lab in a stepwise function.
 
Quote
 
Quote
 
Quote
but in this article they stated they didn't know how the bacteria aquired their ability. If we don't know that, I don't think we can assess the situation.

I think that is a bit disingenuous to the work done and support given to the "educated guess" of the experimenters.
I am not sure why you say so. If we don't know how it happens, how can we talk about whether random processes are adequate? I don't disagree at all with their educated guess that 'the basic mechanisms acting during environmental stress are involved in this adaptation.'
I explained clearly in the last post WHY it was a bit disingenuous because of the detailed analysis of comparitive experiments whose results speak directly to this experiment.  This is no different from a judge using case law and past precedence as a basis for a judgement of a related case.  Whether lawyer or biologist, both parties used previously established norms to support their present conclusions.  THIS is why you can't just say "Their guessing so it's no good".  You have to show WHY the guess is no good by investigating the past precedence evidence and find flaws in reasoning or judgement to "break" the links of the present experimental conclusions with any supporting evidence.  This is not meant to be onerous to the challanger but a necessary step to have any factual or logical basis to challange the experimental conclusions.
 
Quote
You quote Spetner:
"there are two altered enzymes, not just one.
Both these enzymes are needed
Neither of these enzymes alone is effective."

But did you undersand his point that he finds two alterations mathematically suspect, i.e., improbable?
Spetner never referenced (so I suspect was not aware) this experiment.  If Spetner saw the experimental results then what he claimed (his calculation of a small probability of two alterations) would require a bit of rework in the mathematical assumptions.  Because the process happened from scratch (pure PAO1 bug) in three months.  I know I wouldn't carry on with my improbability claims if someone showed me what I was claiming had actually occurred in three months.

 
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I do not understand your point here:
 
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So Spetner is NOT aware of the enzymes in the NEW strain of PAO5502 that eat nylon. I wonder how many point mutations and changed amino acids are in the PAO5502 bug?
Are you saying he was talking about a different organsm, and should have been aware also of this one? The bug he discussed did survive on nylon.
I had told you that there are TWO different bugs already identified before this experiment.  And this experiment created a THIRD bug from scratch.  Spetner is referencing one of the two original bugs when he is talking about point mutations and amino acid changes.  However, he doesn't clarify what baseline he is choosing to compare results (it's probably contained in one of his three references).  I would have to see the referenced paper to make any conclusion.  But I can guess that the mutation numbers are probably in comparison with the parent bug from 30 years ago.  This means that we have 30 years of mutations and changes to account.  And some of these could appear in the organism over time as modifications to the original mutation to improve its nylon eating/digesting capability.

 
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Spetner cannot make these claims [probability of success] without further analyzing the mutational effect of the NEW strain of PAO5502 which was produced in only 3 months (maximum, maybe faster) from PAO1.

What was different about this case - fewer steps?
As stated above, Spetners probability claims are probably based on a point mutation comparison of bugs that seperated 30 years ago.  He hasn't measured the point mutations or amino acid changes between PAO1 and PAO5502.  Those numbers are surely different than the ones he is using in his sputum math.
 
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BUT, we saw in the experiment that PAO5502 was a new strain only AFTER PAO5501 was isolated and the conditions changed. Therefore, might it be possible that PAO1 mutates to form PAO5501 which has enzyme 1 developed but not enzyme 2.  THEN PAO5501 mutates to form PAO5502 which now has both enzyme 1 AND enzyme 2.
Of course it might be possible - but is it the case? Do we know that 5501 had the first enzyme? And if it did, what contribution did it have so as to preserve it?
PAO5501 had the step1 mutation as indicated in my verbose prose above.
 
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Is this pathway a possiblility?  And shouldn't Spetner examine the development of enzyme 1 instead of discarding it with a non-sequitor?
It isn't that he dismissed it. He just concentrated on the probability of the other enzyme, and then mentions that the existence of the need for two enzymes and more steps decreases the probability further.
Again, Spetner doesn't look at the this experiment so cannot make conclusions without at least looking at ALL the evidence.  Remember, this experiment was published seven years before Spetner's comments.
 
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Now, why should there be a built-in capability to metabolize nylon, which did not exist until 1937 or so? The answer is there shouldn't be. But there could have been a built-in capability to metabolize some other substrate. Kinoshita et al. (1981) tested enzyme 2 against 50 possible substrates and found no activity, but that does not mean that it doesn't have activity on some substrate not tested. The activity of enzyme 2 was small, but enabled the bacteria to metabolize the nylon waste.

And we finish with an argument from personal increduality.  Without supporting evidence on WHY the increduality is even valid.
I would not call this an argument from Personal Incredulity (blessed be It's name) but that he thinks bugs are already prewired to deal with environmental stressors such as the natural penicillin that occurs in bread mold.
Again (and again and again with Spetner it seems) this experiment flys in the face of his conclusions.  As I stated above, the experiment laid out a supporting basis of findings to support the stated conclusions.  Spetner doesn't deal with the supporting evidence at all.

And it also seems that Spetner is being a bit hypocritical by "ignoring" enzyme1 development (while then calling it improbable) while at the same time criticising an experiment because "50 tests were not enough so they ignored some other capability.
 
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Avo,
Are you referring to the second-to-last paragraph in the nylon bug article where it states...  
Not directly, but rather from my memory of what I have read in a few different places about organisms being able to turn on a high mutation rate under certain conditions and which apply only to certain parts of the genome, and which gets turned off again when appropriate. And that, really, is the only point I had about all this. That it is a controlled skill which directs the mutations in these cases.
I pointed out in my last post about the supporting claim in previous experiments of increased mutation rate due to starvation.  I have to reread your statement above because semantic mix-ups while discussing this are easy to make.
You are insinuating in your reply that the bug actively chooses to increase mutations when faced with environmental conditions.
I would say that the mutation rate is increased (not sure how without reading the referenced papers that claim this) when the bug finds itself in a starvation condition.  And the only way to "shut down" the high mutation rate is to either adapt (mutate) or find food (or die of course).  There is nothing about choice in the experimenters conclusions so insinuating choice in your response is confusing.
Also, I would like to see a reference on the "apply only to certain parts of the genome" claim you made.  I would disagree to this point at present.

Mike PSS

p.s. Remember, I also admitted something about the experiment.
Quote
Guess what, someone else could run this experiment again and set up a sampling regime to actually test and measure the molecular changes from generation to generation of this bug to see what actual mechanism occurs.  Maybe if I go back to school and pursue a biology doctorate this could be my thesis.

[it's all about me]There, I just gave this board some juicy research idea that some PhD reading this will go out and accomplish.  I want honorable mention from any of you pointy heads that steal my idea and get it published.  I did the hard part in coming up with the idea in the first place.[/it's all about me]

  
Ichthyic



Posts: 3325
Joined: May 2006

(Permalink) Posted: Feb. 02 2007,23:15   

Quote
THERE IS NO DIFFERENCE! And I know you can't hear me, can't believe me, can't examine yourselves.


do you know what projection means?

just wonderin.

--------------
"And the sea will grant each man new hope..."

-CC

  
Fractatious



Posts: 103
Joined: May 2006

(Permalink) Posted: Feb. 03 2007,00:31   

Quote
Why is it drivel? Someone responds to the idea of other dimensions as if they were a magical idea, and I point out that if they exist, they are invisible to us. As you mentioned yourself, it is a part of string theory. If the string theorists are right, then those other dimensions are the bedrock of what we call reality, and yet we can't perceive those dimensions. We already know that there is a world of the unseen - life forms, molecules, atoms. We know that we can perceive but a small band of the electromagnetic spectrum, and yet people perist in always thinking that the latest discovery is the final and last. That we have already uncovered so much of the unseen, should instead have the opposite effect.


I had a vision of Zeno's Paradox blended with Olber's Paradox when I read this. It also appears to be leading away from what is known, to delve into what is unknown and thus blur the known because of it - make sense?

For example, the usage of Super String - which works on a map of space in relation to a string, and that strings coordinates on that map. It is quantum fielding. Having said that, many tend to think that quantum mechanics is this mystical side of physics when its not. Hence computation is the basis behind predictions of Superstring.

Making appeals to science because of incomplete data does not substantiate anything except researchers in science - and that they have more work to do.

  
Cedric Katesby



Posts: 55
Joined: Aug. 2006

(Permalink) Posted: Feb. 03 2007,00:37   

Avo,
    Clearly what we have here is a failure to communicate.
         
Quote

You ask for my scientific arguments for ID, and you insist that unless the game is played on your terms, I can be dismissed.

Well, the fact that you at least acknowledge my request is heartening.  This business about 'the game' though is wierd.  I'm trying to have a discussion with you, like an adult.
When I went to university, my professor said to me "Hey Cedric, read this book and then argue about it".
So I'd read the book, form an opinion and then proceed to defend my opinion in tutorials with other students.
Having read  the book and saying that you like the book or found it convincing is a totally useless thing to say UNLESS you are then going to make an argument to defend your position.  Otherwise, what's the point???
You read a book? (Congratulations.  What do you want, a medal?)
Oh, you like the book?  (Isn't that cute. Yes the pictures are pretty.)
Ah, you found the arguments convincing?  ***Talk is cheap.  Prove it to me.***
You're happy to wax lyrical about your special metaphysical relationship with Life, the Universe and Everything.  (Actually, it's almost impossible to stop you!!) And yet...and yet...when I ask you about your version of a scientific argument for ID, you become all defensive and juvenile with your "I doan wanna play your silly game".
You came here to discuss ID and exchange ideas, yeah?
So, discuss them already.  Like grown-ups do.
If you don't actually have a scientific argument for ID, then do us all a favour and just say so.  I'll promise never to bring the subject up again.
If you like I'll provide you with some escape phrases.
"Can't do it because I'm too busy"
"Can't do it because I"m tired"
"Can't do it because I'm thirsy"
"Can't do it because I have a bus to catch"
"Can't do it because you are secretly in league with the Crab People"
"Can't do it beause there's something good on TV"
Don't worry, I'll be able to connect the dots from here.
   
Quote
Cedric,
For you to dismiss Denton's arguments in Nature's Destiny and Crisis as unscientific is idiotic.

How can I dismiss him if we haven't even discussed him yet?  Make an argument for crying out loud!  Use him as a resource.  In fact, please do if you you think it will support your argument.
I have not dismissed Denton.  OK?
Because we have not had an argument. OK?
We have not had an argument about ID (or Denton). OK?
Now, the red carpet is laid out for you.  Argue.  Make it interesting.

(Waits...whistles "Born Free" in quiet, tuneless sort of way...and waits....)

Oh I forgot.
What was I I'm waiting for?
Avo's list of 'My Favourite Books"? Umm..no.
Avo's explanation of "Where she's coming from?" Umm..no.
How about Avo's special recipe for blueberry pie?  Umm..no. I don't think that was it...
Give me a second. I'll remember eventually.

....Born free...as free...as...the...wind...blows...

  
Ichthyic



Posts: 3325
Joined: May 2006

(Permalink) Posted: Feb. 03 2007,00:39   

Quote
"I doan wanna play your silly game".


translated into Dembskispeak:

"We don't need your pathetic level of detail."

--------------
"And the sea will grant each man new hope..."

-CC

  
argystokes



Posts: 766
Joined: Jan. 2006

(Permalink) Posted: Feb. 03 2007,00:58   

Mike,
Quote
I would say that the mutation rate is increased (not sure how without reading the referenced papers that claim this) when the bug finds itself in a starvation condition.

Chris Hyland posted this image on another thread back in August; it might be helpful for discussion on hypermutation events.


--------------
"Why waste time learning, when ignorance is instantaneous?" -Calvin

  
demallien



Posts: 79
Joined: Jan. 2007

(Permalink) Posted: Feb. 03 2007,04:05   

Quote (avocationist @ Feb. 02 2007,18:10)
Demallion,

 
Quote
Quote (avocationist @ Jan. 29 2007,14:09)
It (rapid mutation) gets turned on in response to the environment, is confined to speific loci in the genome, and is turned off when it's job is done. The mutations which occur under those conditions are random. Thus it took (if I understood the article) 3 months to produce the nylon eating mutation(s) but apparently that was not the only time it occurred. Spetner mentions it being discovered accidentally 30 years after nylon was invented.
***********
Ahhh, OK, there's the disconnect! For you, God is in there fiddling with the mutations that occur so that our bacteria can adapt to it's new environment.


Well wow and double wow. I mean, where did you ever come up with that? How can you just make up stuff that is so completely at odds with everything I said? Are you that desperate to have me say what you think a 'creationist' would say?

Avocationist,

OK, you've got me.  I'm trying to figure out where the logic derails in your thought process.  It's not an easy task, trying to guess where the irrationality lies.  Apparently, I guessed wrong.

Let me recap where we were at:

Me -
Quote
You describe in detail the mutation (a frame shift).  You acknowledge that the gene that has been frame-shifted was in fact originally used for other purposes.  You acknowledge that with further point mutations to this gene we could arrive at a highly specialised organism that is apparently (according to the measures "defined" by Behe) irreducibly complex, yet arrived at by simple random mutation and natural selection.  In your own words, you have just completely invalidated ID, showing that irreducibly complex organisms can evolve naturally.


OK, now from my point of view, you've had just admitted that the whole of the theory of evolution is correct.  But unless we have all gone barking up the wrong tree, you don't think that evolution describes how life on this planet got to where it is today.  Correct?  If so, could you please explain why the process listed above isn't sufficient?

  
Fractatious



Posts: 103
Joined: May 2006

(Permalink) Posted: Feb. 03 2007,04:49   

Quote (deadman_932 @ Feb. 03 2007,15:55)
I think it is accurate to say, without exaggeration, that no being has ever been exposed to such emasculating, dehumanizing mockery as I was when not only was I forced to read k.e say "gerbils" but I was then assaulted by the terrifying visage of Dieter.

I am crying as I write this because this is the same Dieter whose demonic posturings and contortions are shown to millions of callow youths as he prances and capers like Satan himself across the graves of countless innocents.

I am crying because my shaking fear now knows no bounds since others have seen fit to torture my senses with their pixels of furious hate.

I am crying because now mankind itself is endangered.

I am crying because now my life has lost all meaning and I stand at the precipice of madness, staring into the dark abyss of nihilistic suicide.

I HOPE YOU'RE HAPPY.

Mon cherie,

Vous etes une telle reine de drame. Je ris a vous hahaha.

Je vous adore ;)

  
demallien



Posts: 79
Joined: Jan. 2007

(Permalink) Posted: Feb. 03 2007,05:04   

Quote (Fractatious @ Feb. 03 2007,04:49)
Mon cherie,

Vous etes une telle reine de drame. Je ris a vous hahaha.

Je vous adore ;)

Mon chéri... à moins qu'il soit moins homme qu'on a cru ;-)

  
Fractatious



Posts: 103
Joined: May 2006

(Permalink) Posted: Feb. 03 2007,05:13   

Quote (demallien @ Feb. 04 2007,00:04)
Quote (Fractatious @ Feb. 03 2007,04:49)
Mon cherie,

Vous etes une telle reine de drame. Je ris a vous hahaha.

Je vous adore ;)

Mon chéri... à moins qu'il soit moins homme qu'on a cru ;-)

Peut etre je demanderai pardon en avance pour ce commentaire hahaha. Votre conflit n'est pas la mine mais si vous voulez etre plus d'un homme qu'il est, alors etre mon invite  :p

  
Fractatious



Posts: 103
Joined: May 2006

(Permalink) Posted: Feb. 03 2007,05:17   

Quote (Fractatious @ Feb. 04 2007,00:13)
Quote (demallien @ Feb. 04 2007,00:04)
Quote (Fractatious @ Feb. 03 2007,04:49)
Mon cherie,

Vous etes une telle reine de drame. Je ris a vous hahaha.

Je vous adore ;)

Mon chéri... à moins qu'il soit moins homme qu'on a cru ;-)

Peut etre je demanderai pardon en avance pour ce commentaire hahaha. Votre conflit n'est pas la mine mais si vous voulez etre plus d'un homme qu'il est, alors etre mon invite  :p

Votre correction de cher a ete note, a ete catalogue.

Naku noa, Deadman,

Kei pakeha korero tutai tenei.

Poi marie, taku tane hoa.

Jo

  
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