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cryptoguru



Posts: 53
Joined: Jan. 2015

(Permalink) Posted: Feb. 20 2015,05:41   

Wes, very cool optimisation problem, thanks for including your research here ... I'll have a read through before I get back to you on how your variant of the problem is cheating with respect to real biology. :-)

  
Wesley R. Elsberry



Posts: 4991
Joined: May 2002

(Permalink) Posted: Feb. 20 2015,05:41   

Cryptoguru:

Quote

I understand that for your world-view to be correct this is a CORE issue


Cryptoguru understands something about my world-view?

I somehow doubt it. That would require actually knowing what my world-view was, and it seems unlikely that is the case. Although like much else about me, that is a matter of public record, and thus something else that Cryptoguru is willing to prattle on about in complete ignorance of reality.

Go ahead, Cryptoguru, tell me what my world-view is and why what you note is supposed to be a core issue for its correctness.

ETA: I hadn't read that message all the way through, so I was gobsmacked to find Cryptoguru finished it up with this stunning bit of projection:

Quote

can you admit your incorrect presumptions?


Edited by Wesley R. Elsberry on Feb. 20 2015,06:01

--------------
"You can't teach an old dogma new tricks." - Dorothy Parker

    
The whole truth



Posts: 1554
Joined: Jan. 2012

(Permalink) Posted: Feb. 20 2015,05:46   

Quote (cryptoguru @ Feb. 20 2015,03:29)
Quote
Who or what is the "Jesus" thing?

I'm sure there's a church running an Alpha course near you where you could get the answer to that question.

Quote
supernatural green clad leprechauns, rainbow trout, and pink unicorns designed, created, and guide everything in the entire universe and everything outside the universe. See, I'm open minded! More open minded than you!

Yeah maybe, but you wouldn't be rational if you believed those things ... I'm having a rational discussion about my beliefs on origins. I'm not arguing for ANY supernatural causation, just one that is rational. The designer would have to be infinite in temporal existence, knowledge, presence and power to be able to fulfil the requirement of the infinite regression argument (i.e. who created God?). That rules out trout, unicorns, leprechauns or any other finite beings or creatures.

But the green clad leprechauns, rainbow trout, and pink unicorns are all
supernatural as I said, and they're triple infinitely infinite in temporal existence, knowledge, presence and power too! They also fart clouds of rose petals and lollipops as they design, create, and guide everything in and outside of the universe, and I'll bet that the "Jesus" thing can't do that!

--------------
Think not that I am come to send peace on earth: I came not to send peace, but a sword. - Jesus in Matthew 10:34

But those mine enemies, which would not that I should reign over them, bring hither, and slay them before me. -Jesus in Luke 19:27

   
cryptoguru



Posts: 53
Joined: Jan. 2015

(Permalink) Posted: Feb. 20 2015,05:53   

Wes, your world-view pre-supposes purely natural causation and excludes supernatural, intelligent causation ... as that is the purpose of the theory of evolution; to explain origins without the need for an intelligent agent.
Evolutionary theory is the science of atheists and fake atheists (agnostics), who need to find a way to explain the origin and diversity of life without a God.

Thus the need to explain that information can arise automatically from noise by purely natural processes.

  
Wesley R. Elsberry



Posts: 4991
Joined: May 2002

(Permalink) Posted: Feb. 20 2015,06:02   

Quote (cryptoguru @ Feb. 20 2015,05:53)
Wes, your world-view pre-supposes purely natural causation and excludes supernatural, intelligent causation ... as that is the purpose of the theory of evolution; to explain origins without the need for an intelligent agent.
Evolutionary theory is the science of atheists and fake atheists (agnostics), who need to find a way to explain the origin and diversity of life without a God.

Thus the need to explain that information can arise automatically from noise by purely natural processes.

Wrong.

Why can't Cryptoguru check things out before he makes checkable, false claims about them?

Hint: Wikipedia.

--------------
"You can't teach an old dogma new tricks." - Dorothy Parker

    
The whole truth



Posts: 1554
Joined: Jan. 2012

(Permalink) Posted: Feb. 20 2015,06:05   

Quote (cryptoguru @ Feb. 20 2015,03:53)
Wes, your world-view pre-supposes purely natural causation and excludes supernatural, intelligent causation ... as that is the purpose of the theory of evolution; to explain origins without the need for an intelligent agent.
Evolutionary theory is the science of atheists and fake atheists (agnostics), who need to find a way to explain the origin and diversity of life without a God.

Thus the need to explain that information can arise automatically from noise by purely natural processes.

Oh, so you didn't say this:

"I'm not arguing for ANY supernatural causation..."?

You're just another dishonest, arrogant YEC loon who doesn't know squat about science, rationality, and reality.

--------------
Think not that I am come to send peace on earth: I came not to send peace, but a sword. - Jesus in Matthew 10:34

But those mine enemies, which would not that I should reign over them, bring hither, and slay them before me. -Jesus in Luke 19:27

   
Wesley R. Elsberry



Posts: 4991
Joined: May 2002

(Permalink) Posted: Feb. 20 2015,06:10   

Quote (cryptoguru @ Feb. 20 2015,05:41)
Wes, very cool optimisation problem, thanks for including your research here ... I'll have a read through before I get back to you on how your variant of the problem is cheating with respect to real biology. :-)

Given that Cryptoguru preemptively excluded studies of movement, I have no doubt that his boundless capacity for unjustified dismissal will allow him to do just that.

However, I have demonstrated that Avida is not dependent on having anything that corresponds to a Dawkinsian "distant ideal target", nor a hierarchical set of rewarded functions, in order to evolve behavior useful to Avidians.

--------------
"You can't teach an old dogma new tricks." - Dorothy Parker

    
cryptoguru



Posts: 53
Joined: Jan. 2015

(Permalink) Posted: Feb. 20 2015,06:12   

Wes, wow! I'm wrong?!?
So you believe in supernatural causation?
What kind of supernatural causation?

The theory of evolution was proposed by a trained clergyman (Darwin) who rejected God because his favourite daughter died. He is very clear in his writings what his motivation was for his theory, he therefore embraced the old-age naturalistic world-view proposed by Charles Lyell's work and rejected the Bible as a source of truth .. I know that doesn't prove evolution is wrong, but the world-view that birthed the theory (atheism) is the same world-view that propagates and enforces it now.
There's a lot of people who believe in God, who also believe in evolution ... but generally only because they don't understand how it contradicts their faith and is therefore irrational to believe both.

  
midwifetoad



Posts: 4003
Joined: Mar. 2008

(Permalink) Posted: Feb. 20 2015,06:24   

Even Godwin's Law mutates and evolves.

--------------
Any version of ID consistent with all the evidence is indistinguishable from evolution.

  
N.Wells



Posts: 1836
Joined: Oct. 2005

(Permalink) Posted: Feb. 20 2015,06:28   

Quote (Wesley R. Elsberry @ Feb. 20 2015,06:10)
Quote (cryptoguru @ Feb. 20 2015,05:41)
Wes, very cool optimisation problem, thanks for including your research here ... I'll have a read through before I get back to you on how your variant of the problem is cheating with respect to real biology. :-)

Given that Cryptoguru preemptively excluded studies of movement, I have no doubt that his boundless capacity for unjustified dismissal will allow him to do just that.

However, I have demonstrated that Avida is not dependent on having anything that corresponds to a Dawkinsian "distant ideal target", nor a hierarchical set of rewarded functions, in order to evolve behavior useful to Avidians.

But it doesn't even have a single globe rating at Planet Source Code*, so how can it possibly be any good?

*I'll get round to checking whether that's actually true later, but it sounds plausible to me for now, so I'm going with it.

/snark

  
Wesley R. Elsberry



Posts: 4991
Joined: May 2002

(Permalink) Posted: Feb. 20 2015,06:44   

Quote (cryptoguru @ Feb. 20 2015,06:12)
Wes, wow! I'm wrong?!?
So you believe in supernatural causation?
What kind of supernatural causation?

The theory of evolution was proposed by a trained clergyman (Darwin) who rejected God because his favourite daughter died. He is very clear in his writings what his motivation was for his theory, he therefore embraced the old-age naturalistic world-view proposed by Charles Lyell's work and rejected the Bible as a source of truth .. I know that doesn't prove evolution is wrong, but the world-view that birthed the theory (atheism) is the same world-view that propagates and enforces it now.
There's a lot of people who believe in God, who also believe in evolution ... but generally only because they don't understand how it contradicts their faith and is therefore irrational to believe both.

I get that from both ends of the argument. I certainly am familiar with a wide variety of arguments from both directions on why treating evolutionary biology as broadly true is inimical to faith, though I haven't found any yet that I fully agree with. (And this is one of the things I find most annoying about discussing things with Cryptoguru, which is the "you disagree, therefore you don't understand" approach he so often takes.) It doesn't change the facts, though. Facts that are in the public domain and should have been consulted before making blithe, false pronouncements. I think there was something relevant said about "false witness" once or twice somewhere.

Speaking of which, it is by no means clear that Darwin's beliefs are so easily pigeon-holed. He certainly did come to a forceful rejection of the Calvinist doctrine of "utter depravity", but rejecting Calvin is not the same thing as rejecting God.

Darwin:

   
Quote

Authors of the highest eminence seem to be fully satisfied with the view that each species has been independently created. To my mind it accords better with what we know of the laws impressed on matter by the Creator, that the production and extinction of the past and present inhabitants of the world should have been due to secondary causes, like those determining the birth and death of the individual.


It's pretty clear from his own writings that he had drifted far from any formal denominational Christianity, but the tossed-off assignment of causes and internal motivations strikes me as deeply unscholarly. Whether or not one agrees or disagrees with claims about Darwin's theological stance, one can assess for oneself the utility and reasonableness of his claim above. I find it reasonable, and Cryptoguru apparently does not.

And I think that part of being rational is having one's facts straight, and thus one's premises in argument correct, so I don't think Cryptoguru is in any good position to launch an attack on the rationality of anybody else.

--------------
"You can't teach an old dogma new tricks." - Dorothy Parker

    
cryptoguru



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Joined: Jan. 2015

(Permalink) Posted: Feb. 20 2015,07:29   

Quote
Cryptoguru is in any good position to launch an attack on the rationality of anybody else.


that is just your opinion.

I think the others on this board would be quite interested in the paradox that you've raised whereby you believe in God, yet are fundamental in the research and development of what is currently considered a foundational proof of evolution.

Most of the arguments against me on the discussion board here (from others) have been about the stupidity and irrationality of believing in God, presumably given the "truth" of evolution.

So Wes, it's your turn to be bashed for believing in God. :-)


Quote
Speaking of which, it is by no means clear that Darwin's beliefs are so easily pigeon-holed.

In a lot of his public writing and discussion he paid lip-service to God (as did Hitler) because he was aware of the majority view-point at the time. His private writings and letters give more info about his motivations and his actual beliefs.

So where do you think information originates Wes? Do you think information and designs to solve problems can emerge automatically through purely random mutation and a competition? Or do you believe that a creator is needed?

What do you believe about the origin of life itself? Do you believe it came about through supernatural causation ... or do you think life emerged spontaneously from chemical soup?

BTW: I find that making bold statements and black and white claims gets more information from a discussion as it helps polarise people's viewpoint and you get quicker to the real core of the debate. I'm happy to address and change my assumptions if they're proved wrong (as you will have seen me do already on a couple of occasions).

  
NoName



Posts: 2729
Joined: Mar. 2013

(Permalink) Posted: Feb. 20 2015,07:48   

Quote (cryptoguru @ Feb. 20 2015,05:59)
Cubist: I did answer your question, you just didn't understand the answer.

I explained what I mean by "new" and "novel" for the purposes of this discussion, is that which is too difficult to arise from a purely random event. i.e. one which would probabilistically require natural selection through competition and could not just arise through just a sequence of mutation events.
I would not expect to randomly arrive at a meaningful sentence by randomly selecting letters, however I may expect to get a short 3 or 4-letter word randomly.

And yet it can be shown that production of words produced from random selection of characters, combined with a varying set of grammar and syntax rules can generate meaningful sentences.
Similarly, it can be shown that random variations in genetic material can occur and be judged against an existing, and slowly changing, fitness landscape.  The information that results is that "this change fails to fail, that change fails."
This is meaningful information in the only sense that matters.
 
Quote
You believe that natural selection is the agent that turns random events into information.

Yes.  Because it can be shown that it does.  Given a set of randomly generated letters being combined, plus a selection rule that permits collections of letters to be preserved if a given collection occurs in a dictionary, meaningful words will arise, quite rapidly.  The dictionary can be change out and the process continued, and a meaningful collection of words will arise, quite rapidly, and as variations from the original set, which will be initially drastically reduced and will then once again proliferate.
For amusement, and potential enlightenment, see Markov Chain Text Generation Results
 
Quote
So we need to be able to differentiate between noise and information; a sequence of symbols that has specified meaning ... i.e. it solves a problem

That's what  filters do.  Information is what passes through, noise is what's rejected.
You are confusing Shannon information theory with semantics.  They are often confused, but starkly distinct.
Worse, as is clear in  your examples that follow, you demand omniscience in the determination.  How do you know that any given random string is meaningless across all possible languages, or even across all existent languages?  Answer: you don't.  That's why information and meaning are distinct.
 
Quote
Example:
this point deletion creates a new string ... but it is not information, we can't differentiate it from noise, even if it was advantageous we can't call it information yet.
gacgtacga
gcgtacga

this sequence of new symbols (not pre-existant) could be new information
gacgtacga
gacgtacgattcaatgact

we don't known that until we show that the new string does something (has meaning) and is advantageous. Also a new string that small could potentially arise through mutation without any selective guidance.

Mutations arise without any guidance other than physics and chemistry and the constraints they impose.  Genetic mutations are random selection out of a very small pool of possible choices (4 codons, with each codon highly restricted in terms of its own chemical makeup due to physics and chemistry).  No guidance is needed, or possible, for mutations.  Guidance comes in at the stage of replication into a next generation.  Winners of the first lottery get to participate in the second lottery.  Lottery numbers are random with respect to winners/losers at each round.  Selection is from round to round.
You really seem not to get this.
Quote
So I'm back to using ORFan genes, we know that they are functional and advantageous and they have no known ancestor, they are new information and they are significantly large enough to be impossible to achieve purely randomly.

No, we do not know the latter 'fact'.  You assert it, but proof is lacking.  Assuming your conclusion, aren't you?
Quote
Sure there are things smaller than this that could be information, but how do we know they are? In the case of ORFan genes we have a clear example of new genetic material that is useful to the organism and not pre-existing that would require something other than pure dumb-luck to occur.

So I'm asking for a demonstration of new information on this level (ORFan gene size) to arise out of purely random mutation and natural selection, without using intelligently applied known targets to artificially guide the selective process.

DO YOU UNDERSTAND MY QUESTION YET???
(or do you not want to understand it?)

I've bolded and italicized the fatal contradictions and confusions that rig the game against any possibility of a satisfactory answer.
You do realize that demanding evidence or proof that something can arise that is "too difficult to arise from a random event" requires proof that there are things that cannot arise from random events.  No such proof exists.
Worse, such a proof requires an operational definition of 'random' that is accurate, precise, consistent, and used consistently throughout said proof.  You are assuming your conclusions in the manner in which you set up your "challenge."
Then there is the issue that you confuse random mutation and natural selection.  Natural selection does not generate new information, random mutation  does.  Natural selection eliminates the 'unmeaningful'.  Meaning is the fitness of the organism for the environment in which it occurs.  Random mutation perturbs the content of the ever-changing set of entities on which natural selection filters out the less fit, that is, the less meaningful for the current environment, which is also changing, albeit generally at a vastly slower rate.

Your question, your "challenge" is precisely equivalent to "have you stopped beating your wife."
For reasons already adequately presented by others.
It also betrays incredible ignorance, or dishonesty, about how evolution works.
Worse, it ignores the real-world examples that prove that what you insist is impossible does, in fact, happen all the time.  Which is  doubtlessly why you focus on AVIDA and on your own misconceptions of what 'must' be the case, rather than what is clearly, demonstrably, the case.
Of course, if you were to confront Lenski's work head-on, you would have to propose an alternate explanation for the  new and novel information's inception and persistence in the population.  You would have to show when, and how, some intelligence intervened to do what natural processes allegedly cannot.
Until you do, we have no warrant for dismissing the answer 'it was all done by natural processes'.  No other process has been proposed.  The process we propose is a conclusion based on the evidence and known facts.  Not an assumption, not a presupposition.
Whereas you insist that natural processes cannot produce information despite the countless counter-examples that prove this to be incorrect.  Science would not be possible if this were correct.

  
NoName



Posts: 2729
Joined: Mar. 2013

(Permalink) Posted: Feb. 20 2015,07:56   

Quote (cryptoguru @ Feb. 20 2015,06:53)
Wes, your world-view pre-supposes purely natural causation and excludes supernatural, intelligent causation ... as that is the purpose of the theory of evolution; to explain origins without the need for an intelligent agent.
Evolutionary theory is the science of atheists and fake atheists (agnostics), who need to find a way to explain the origin and diversity of life without a God.

Thus the need to explain that information can arise automatically from noise by purely natural processes.

Yet we have evidence of nothing but natural processes.
We have evidence that natural processes result in everything we encounter.
You have assertions, based largely on superstition and misunderstanding of what we conclude based on evidence.

We have no warrant for including 'supernatural intelligent causation' in any explanatory statement, for we have no evidence, and damn close to no meaningful definition of, the terms involved.
Note in particular that supernatural and causal are contradictory terms.  The natural world can be, and often is, defined as the network of possible causal relationships between things, processes, and events.
All causal occurrences are natural.  It is easy to show this to be wrong; all you have to do is show a non-natural cause.  Or demonstrate the existence of any non-natural "thing".  We have no warrant for even considering the existence of such a "thing" other than works of fiction or collections of assertions based on what appear to be fictions.  [NB.  'thing' is used in scare quotes because 'thing' as generally taken means precisely 'natural thing'.  The supernatural is other than 'thing'-like.  It is the opposite of 'thing'-ness, else it is not supernatural.  Ontology 101]

Thus the need to explain that there is information that cannot arise through purely natural processes by first showing that there is a non-natural process.
Go for it.

  
OgreMkV



Posts: 3668
Joined: Oct. 2009

(Permalink) Posted: Feb. 20 2015,07:59   

Quote (cryptoguru @ Feb. 20 2015,04:59)
Cubist: I did answer your question, you just didn't understand the answer.

I explained what I mean by "new" and "novel" for the purposes of this discussion, is that which is too difficult to arise from a purely random event. i.e. one which would probabilistically require natural selection through competition and could not just arise through just a sequence of mutation events.
I would not expect to randomly arrive at a meaningful sentence by randomly selecting letters, however I may expect to get a short 3 or 4-letter word randomly.

You believe that natural selection is the agent that turns random events into information.

So we need to be able to differentiate between noise and information; a sequence of symbols that has specified meaning ... i.e. it solves a problem

Example:
this point deletion creates a new string ... but it is not information, we can't differentiate it from noise, even if it was advantageous we can't call it information yet.
gacgtacga
gcgtacga

this sequence of new symbols (not pre-existant) could be new information
gacgtacga
gacgtacgattcaatgact

we don't known that until we show that the new string does something (has meaning) and is advantageous. Also a new string that small could potentially arise through mutation without any selective guidance.

So I'm back to using ORFan genes, we know that they are functional and advantageous and they have no known ancestor, they are new information and they are significantly large enough to be impossible to achieve purely randomly.
Sure there are things smaller than this that could be information, but how do we know they are? In the case of ORFan genes we have a clear example of new genetic material that is useful to the organism and not pre-existing that would require something other than pure dumb-luck to occur.

So I'm asking for a demonstration of new information on this level (ORFan gene size) to arise out of purely random mutation and natural selection, without using intelligently applied known targets to artificially guide the selective process.

DO YOU UNDERSTAND MY QUESTION YET???
(or do you not want to understand it?)

You reject contingency, which is required for evolution.

In other words, your definitions make it strictly impossible for evolution to meet your requirements.

Good thing no one cares about your definitions.

--------------
Ignored by those who can't provide evidence for their claims.

http://skepticink.com/smilodo....retreat

   
cryptoguru



Posts: 53
Joined: Jan. 2015

(Permalink) Posted: Feb. 20 2015,07:59   

NoName: you seem to keep conflating the 2 distinct concepts

1) purely random mutation - nobody believes this is capable of producing information
2) random mutation plus natural selection - you believe this can create information, I don't

Monkeys typing on typewriters will not produce the works of Shakespeare as Dawkins has attested to, he contests that cumulative natural selection is able to guide the purely random process and create information. I want to see that demonstrated ... you keep jumping around your definitions. This is a simple issue ... find "new information" that couldn't arise purely randomly  by using random mutation and natural selection.

Find a solution that defies simple probability e.g. rolling a die 36 times will likely get you 2 sixes in a row at some point ... this is not what we're talking about, you need to demonstrate complex information that could not occur probabilistically arising because natural selection is doing something that pure dumb-luck can't.

  
OgreMkV



Posts: 3668
Joined: Oct. 2009

(Permalink) Posted: Feb. 20 2015,08:09   

Quote (NoName @ Feb. 20 2015,07:56)
Quote (cryptoguru @ Feb. 20 2015,06:53)
Wes, your world-view pre-supposes purely natural causation and excludes supernatural, intelligent causation ... as that is the purpose of the theory of evolution; to explain origins without the need for an intelligent agent.
Evolutionary theory is the science of atheists and fake atheists (agnostics), who need to find a way to explain the origin and diversity of life without a God.

Thus the need to explain that information can arise automatically from noise by purely natural processes.

Yet we have evidence of nothing but natural processes.
We have evidence that natural processes result in everything we encounter.
You have assertions, based largely on superstition and misunderstanding of what we conclude based on evidence.

We have no warrant for including 'supernatural intelligent causation' in any explanatory statement, for we have no evidence, and damn close to no meaningful definition of, the terms involved.
Note in particular that supernatural and causal are contradictory terms.  The natural world can be, and often is, defined as the network of possible causal relationships between things, processes, and events.
All causal occurrences are natural.  It is easy to show this to be wrong; all you have to do is show a non-natural cause.  Or demonstrate the existence of any non-natural "thing".  We have no warrant for even considering the existence of such a "thing" other than works of fiction or collections of assertions based on what appear to be fictions.  [NB.  'thing' is used in scare quotes because 'thing' as generally taken means precisely 'natural thing'.  The supernatural is other than 'thing'-like.  It is the opposite of 'thing'-ness, else it is not supernatural.  Ontology 101]

Thus the need to explain that there is information that cannot arise through purely natural processes by first showing that there is a non-natural process.
Go for it.

This is an excellent point. Crypto (and other creationists) accept that which has no supporting evidence, because it agrees with their worldview and explicitly reject that which does have evidence solely because it offends their worldview.

I would, however, suggest that Crypto read up on Ken Miller and Robert Bakker.

Finally, we should note that anything that can affect the material world will leave traces of those effects. Much like we can't see wind or electrons, but we can see the leaves blowing and control electricity.

Any supernatural event that affects the material world will leave evidence of that event. Whether or not we can study the cause of that event (the supernatural thing) is immaterial (get it?), we can see the event itself.

And we don't. Despite thousands of years of desperately looking, no event has happened that must be attributable to a supernatural cause.

Crypto has adopted definitions for things that explicitly reject the known causes behind things like evolution. By relying on his own knowledge and rejecting the knowledge of others, he has pigeon holed himself. It's a  shame, he seems like a smart guy, too bad he refuses to learn.

I mean look at his statement, "I haven't read it, but I will and I will find where you are cheating".  One, it's pretty arrogant. Two, it sounds just like Behe at Kitzmiller. "No, I haven't read those 30 books and 75 papers, but I know that they don't answer my question." The reason, of course, is because his question and logic was framed in such a way as that it could, by definition, never be answered. Same with crypto.

--------------
Ignored by those who can't provide evidence for their claims.

http://skepticink.com/smilodo....retreat

   
midwifetoad



Posts: 4003
Joined: Mar. 2008

(Permalink) Posted: Feb. 20 2015,08:12   

Regarding ORFan genes:

What percentage of genomes have been sequenced and cataloged?
Does having no cousins logically prove that one has no parents?

--------------
Any version of ID consistent with all the evidence is indistinguishable from evolution.

  
Wesley R. Elsberry



Posts: 4991
Joined: May 2002

(Permalink) Posted: Feb. 20 2015,08:20   

Cryptoguru:

 
Quote

that is just your opinion.


Sure, though presented with supporting evidence. So perhaps the "just" is out of place there.

As for the others on this board, there's only a small probability that any of them are surprised about what Cryptoguru was completely ignorant of until this morning (but perfectly willing to confidently state falsehoods about). I highly doubt that I will get the kind of excoriation Cryptoguru has received, and there are reasons why that should be the case. One is that I try to get stuff right.

The PI for my post-doc was Prof. Rob Pennock, a Quaker. The post-doc itself was funded under a Templeton Foundation grant. You can Google "John Templeton Foundation".

As for me, I follow the evidence wherever it leads. I take the rampant falsehoods told in furtherance of antievolution as one more indication of where it does not lead.

And that quote from Charles Darwin? It answered several of Cryptoguru's further inquiries.

--------------
"You can't teach an old dogma new tricks." - Dorothy Parker

    
N.Wells



Posts: 1836
Joined: Oct. 2005

(Permalink) Posted: Feb. 20 2015,08:37   

Quote
1) purely random mutation - nobody believes this is capable of producing information
Hold on a moment.  That is true only if we define "nobody" as "only you".  Random mutations produce new Shannon information. Whether that has any usefulness or is neutral or disadvantageous gets determined later.  This is another instance of you smuggling in your conclusions.

As another example of misuse of "information" or "meaning": you remember those "markings on beaches" that you mentioned earlier?  Sedimentologists can use ancient versions of "markings" like that to figure out which way to move the drill rig to find oil: in the right context, that can be several million dollars worth of information and meaning right there.

  
midwifetoad



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Joined: Mar. 2008

(Permalink) Posted: Feb. 20 2015,08:40   

Whatever Darwin may have believed, he was not likely a young earth creationist. I think it is pretty certain he stopped believing that god steps in to save falling sparrows.

--------------
Any version of ID consistent with all the evidence is indistinguishable from evolution.

  
cryptoguru



Posts: 53
Joined: Jan. 2015

(Permalink) Posted: Feb. 20 2015,08:50   

Quote
Regarding ORFan genes:
What percentage of genomes have been sequenced and cataloged?
Does having no cousins logically prove that one has no parents?


midwifetoad: excellent question ... they assumed this was the case when they first started finding them. The theory went, that the ratio of ORFan genes to those which are represented in other organisms would start to level off as we sequence more genomes. Fact is they are linear and continue to grow linearly the more we sequence.

We obviously know an organism has parents, but this evidence pushes against the assumption of cousins in other species. You can't claim we're 96% chimp and at the same time say that 20-40% of our DNA is not found anywhere else. If you are assuming common ancestry between 2 species you need to be able to explain the divergence of their DNA. Previously we categorised the non-coding DNA as junk, now we know it isn't junk ... so we have to account for the information in the non-coding DNA now too which contains many ORFan genes (i.e. we're not 96% chimp). If we have to account for a minimum of 20% of our DNA being de novo in the last 13 Million years, we have to believe in minimum 500 advantageous mutations preserved every single generation. That is provably false.

http://mic.sgmjournals.org/content....99.full
quote from this article
Quote
Fig. 1(a)⇓ shows that the number of these orphan bacterial genes is continuing to rise in a roughly linear fashion despite the large number of genomes sequenced, and this trend shows no signs of levelling off. In fact, the last 30 species included in this study provided 30 % of the total orphans in our study (mean=441±643 for dataset D1; despite the large standard deviation all species contributed orphans).


and from this New Scientist article
http://ccsb.dfci.harvard.edu/web....013.pdf
Quote
Some other researchers, however, are
starting to think it may be surprisingly
common. A study of 270primate orphan
genes, led by M. Mar Albà and Macarena
Toll-Riera of the Municipal Foundation
Institute for Medical Research in Barcelona,
Spain, found that only a quarter could be
explained by rapid evolution after duplication
(Molecular Biology and Evolution, vol 26, p
603). Instead, around 60 per cent appeared
to be new.

  
Soapy Sam



Posts: 659
Joined: Jan. 2012

(Permalink) Posted: Feb. 20 2015,08:53   

Quote (midwifetoad @ Feb. 20 2015,14:12)
Regarding ORFan genes:

What percentage of genomes have been sequenced and cataloged?
Does having no cousins logically prove that one has no parents?

Most amino acids are substitutable by at least one other. Ultimately, unless there is constraint of some kind, gradual attrition will erase all sequence identity. For example alpha helix turns can be made from any mix of polar/non-polar residues (bar a few) in the appropriate pattern. One can change one's analysis, to score the residues simply on the binary hydrophobic/hydrophilic character - but this would not so readily support the conclusion that all alpha helixes share a common ancestor, because this binary pattern may find a huge set of common matches from convergence and 'chance'. Two consecutive turns would give the same score, but this does not mean they actually arose by original duplication (although well they might).

But the existence of ORFans in itself is fundamentally consistent with incomplete coverage and gradual erosion of signals of descent. If these genes really did come into existence de novo, the possibility on the data that remain that they arose by copying and scrambling would still have to be considered as a hypothesis. It's a classic case of absence of evidence is not evidence of absence, with respect to common ancestors. Which I know bugs the hell out of IDists, who don't see why absence of evidence does not mean evidence FOR something else. The 'null hypothesis' would be descent.

Edited by Soapy Sam on Feb. 20 2015,15:55

--------------
SoapySam is a pathetic asswiper. Joe G

BTW, when you make little jabs like “I thought basic logic was one thing UDers could handle,” you come off looking especially silly when you turn out to be wrong. - Barry Arrington

  
NoName



Posts: 2729
Joined: Mar. 2013

(Permalink) Posted: Feb. 20 2015,08:55   

Quote (cryptoguru @ Feb. 20 2015,07:12)
...
The theory of evolution was proposed by a trained clergyman (Darwin) who rejected God because his favourite daughter died. He is very clear in his writings what his motivation was for his theory, he therefore embraced the old-age naturalistic world-view proposed by Charles Lyell's work and rejected the Bible as a source of truth .. I know that doesn't prove evolution is wrong, but the world-view that birthed the theory (atheism) is the same world-view that propagates and enforces it now.
There's a lot of people who believe in God, who also believe in evolution ... but generally only because they don't understand how it contradicts their faith and is therefore irrational to believe both.

That's appalling and vile.
It amounts to nothing more than a particularly offensive ad hominem argument.

Darwin's motivations for writing Origin of Species are entirely irrelevant to its truth/falsity.  Entirely.
Darwin could have been a mother-murdering puppy torturer who routinely desecrated communion wafers and spit on the pope.  Irrelevant to the truth/falsity of his work.
He may have been a virtual saint, kindly to the poor and downtrodden, a man who routinely exceeded the tithing recommendations of the church, gave all his property to the poor, worked tirelessly to abolish slavery and institute women's suffrage.  Entirely irrelevant to the truth/falsity of his work.

Neither your opinion of  Darwin the man nor mine matters to the truth or falsity of his ideas.

Good men can do bad work.  Bad men can do good work.  It is the work that matters, not the man.  Not when it is the work under consideration.

That his work has stood up so well, has survived falsification, has made, and generated, predictions that have by and large been satisfied, has enabled vast increases in our understanding of the natural world, those are the facts that matter.

That Darwin might have been wrong in the details hardly matters -- his 'big picture' theory of the inter-relatedness of all things, his theory of natural selection, broadly taken, are breathtaking insights that have stood the test of time.  They have stood that test by generating ever-better insights into the information nature serves up by the process of the operation of natural laws, the foundation and cornerstone of science.

You're just desperate to focus on anything other than the information served up by natural processes.  If you don't like the message, attack the messenger.  That's what you're doing, and it is contemptible.

  
midwifetoad



Posts: 4003
Joined: Mar. 2008

(Permalink) Posted: Feb. 20 2015,09:06   

So when there are no fingerprints, and the door is locked from the inside, goddidit. I think I write a detective novel. I don't think anyone has used that plot.

--------------
Any version of ID consistent with all the evidence is indistinguishable from evolution.

  
NoName



Posts: 2729
Joined: Mar. 2013

(Permalink) Posted: Feb. 20 2015,09:16   

Quote (cryptoguru @ Feb. 20 2015,08:59)
NoName: you seem to keep conflating the 2 distinct concepts
No, that would be you.  Random mutation introduces changes.  Natural selection is the descriptive term for the success/failure of those changes to be preserved in the population, generation by generation.

   
Quote
purely random mutation - nobody believes this is capable of producing information

That, sir, is a lie.  Random mutation is capable of producing information in any relevant sense of the term.  That is, in all cases except those where a relevant  term has been prejudicially excluded a priori.  Or where information is conflated with meaning; they are distinct concepts.  It is known that there are 'meaningless' genetic changes.  There are two codons which are interchangeable in some/most/all cases, and thus changing from one to the other is effectively a no-op.  And thus meaningless from an evolutionary perspective.
     
Quote
2) random mutation plus natural selection - you believe this can create information, I don't

And you are demonstrably wrong.  Random noise plus a finely tuned filter can pick out single tones.  Random noise plus a bank of finely tuned filters, which is precisely analogous to  a single step in the  series that constitutes evolution over time, can pick out harmonics.
Or consider the Oklo reactors -- random assortment and arrangement of minerals and liquids resulting in natural nuclear reactors that turn on and off until eventually, over long periods of time, they extinguished for a last time.  The information of the residue allows us to know this, and all of it produced by random processes operating under natural law.
     
Quote
Monkeys typing on typewriters will not produce the works of Shakespeare as Dawkins has attested to, he contests that cumulative natural selection is able to guide the purely random process and create information.

There's that 'guide' notion again.  What guides mutations are the laws of physics and chemistry and the circumstances, the entirely specific context, in which they operate.  Nothing guides random mutation in the sense you keep using.  Natural selection gives the appearance of guiding because it preserves some of the random changes and not others.  Over successive generations, this results in a changed population.  The random changes are still random changes.  The result is selected from the set of all random changes, over time.  And that's where the appearance of 'guided' comes in.  It is guided in a purely naturalistic, historical sense.  And the guide is the slowly changing environment.
     
Quote
I want to see that demonstrated ... you keep jumping around your definitions. This is a simple issue ... find "new information" that couldn't arise purely randomly  by using random mutation and natural selection.

Stop assuming your conclusion.
Prove that random mutations and natural selection cannot generate new information.  You can't.  We have the proof that it can.  Look at life.  Look at Lenski's experiment.  Look at astrophysics.

     
Quote
Find a solution that defies simple probability e.g. rolling a die 36 times will likely get you 2 sixes in a row at some point ... this is not what we're talking about,

Yes it is.  If you have a system that continues to preserve the sixes that come up, you wind up with as many sixes in a row a you have dice.  Or to better simulate nature, you preserve whichever number shows up twice in the set of dice.  You will soon wind up with nothing but that number in the set, no matter how large the set is.
Do you not know the game Yahtzee?  This is precisely what it accomplishes, the task you claim is impossible.
     
Quote
you need to demonstrate complex information that could not occur probabilistically arising because natural selection is doing something that pure dumb-luck can't.

No, you have to demonstrate that 'complex information' cannot arise probabilistically.
You keep asserting it as if it were known, and proven to be the case.
It isn't and it hasn't.

  
Quack



Posts: 1961
Joined: May 2007

(Permalink) Posted: Feb. 20 2015,09:58   

Quote
Monkeys typing on typewriters will not produce the works of Shakespeare as Dawkins has attested to, he contests that cumulative natural selection is able to guide the purely random process and create information.

Anyone ever computed the probability that any number of monkeys with typewriters could produce even one of the works of Shakespeare? I don't think even the Isaac Newton of Information Theory would care to try.

IMHO, not even the entire population of the world typing randomly on their keyboards would do much better.

When people resort to that kind of arguments it is a strong indicator they are somewhat clueless.

--------------
Rocks have no biology.
              Robert Byers.

  
Soapy Sam



Posts: 659
Joined: Jan. 2012

(Permalink) Posted: Feb. 20 2015,10:05   

Quote (midwifetoad @ Feb. 20 2015,15:06)
So when there are no fingerprints, and the door is locked from the inside, goddidit. I think I write a detective novel. I don't think anyone has used that plot.

There is a problem of sorts, when one looks at an ORFan that is restricted to a single species. How do they change so completely in such a short time frame? But ORFans most likely arise in regions that lack substantial constraint anyway. If the parent sequence was constrained, the ORFan would not get off the ground as a variation on it.

They often seem to arise because transcription/translation signals get wrapped around a random stretch of previously untranslated DNA. Since the original sequence, and probably the new one as well, lack selective constraint, they will just keep diverging at twice the neutral rate. If the new sequence proves beneficial, it's unlikely to be perfect, so directional selection will push it yet more rapidly away from the original sequence. Hey Presto! Genes from nowhere!

Edited by Soapy Sam on Feb. 20 2015,18:19

--------------
SoapySam is a pathetic asswiper. Joe G

BTW, when you make little jabs like “I thought basic logic was one thing UDers could handle,” you come off looking especially silly when you turn out to be wrong. - Barry Arrington

  
Wesley R. Elsberry



Posts: 4991
Joined: May 2002

(Permalink) Posted: Feb. 20 2015,10:07   

The "typing monkeys" analogy.

--------------
"You can't teach an old dogma new tricks." - Dorothy Parker

    
NoName



Posts: 2729
Joined: Mar. 2013

(Permalink) Posted: Feb. 20 2015,10:11   

Quote (cryptoguru @ Feb. 20 2015,08:59)
...you need to demonstrate complex information that could not occur probabilistically arising because natural selection is doing something that pure dumb-luck can't.

Narrowing in on what seems to be the key point.
And moving away from biology, which seems to be the sore point, as similar issues in other fields don't result in the same visceral and irrational rejection of natural law plus chance/randomness.

Consider stellar spectra.  They are complex.  They are information, they convey very precise details about the composition of the star and useful information about the intervening matter, if any, plus useful distance information (via red shift).  Much information.  The information is complex, the meaning is not trivially 'read off' the surface data, but the information is there and it is meaningful.
Stellar composition and stellar position are both effectively random.  Natural law working on the random distribution of matter results in stellar genesis, and the life-cycle of the star results, often enough, in nucleogenesis.  The materials and processes involved leave their signature, so to speak, in the stellar spectra.

So how is this not a demonstration that complex information can occur probabilistically, by dumb-luck, which you assert is not possible?
Where is there anything other than dumb-luck and natural law involved?  Why is the information of the stellar spectra not complex and meaningful information?  Why is the red-shift of the spectrum not meaningful and complex information about the distance of the star?
Where does this example fail to meet the honest portions of your criteria for complex meaningful information arising from purely natural law with probabilistic 'dumb-luck'?
Is it, could it be, that it is not about biology, and that it is entirely driven by natural law, which you reject out of hand for biology, for reasons yet to be satisfactorily supported?

  
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