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  Topic: Reinventing Evolutionary Theory, A candid look at the current theory< Next Oldest | Next Newest >  
Renier



Posts: 276
Joined: Jan. 2006

(Permalink) Posted: May 25 2006,03:24   

Oh yes, and PLEASE have a look at the RATE project. It is a really good example on how not to do science. Well, at least they tried....
RATE debunked

  
afdave



Posts: 1621
Joined: April 2006

(Permalink) Posted: May 25 2006,03:36   

Incorygible ... you'll have your response later this morning.  

I've never ignored you now, have I?

--------------
A DILEMMA FOR THE COMMITTED NATURALIST
A Hi-tech alien spaceship lands on earth ... DESIGNED.
A Hi-tech alien rotary motor found in a cell ... NOT DESIGNED.
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afdave



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(Permalink) Posted: May 25 2006,03:42   

Quote
Oh yes, and PLEASE have a look at the RATE project. It is a really good example on how not to do science. Well, at least they tried....
RATE debunked


Is this a convincing 'debunking' for a change?  The ones you have given me before from Talk Origins were not convincing at all ...

--------------
A DILEMMA FOR THE COMMITTED NATURALIST
A Hi-tech alien spaceship lands on earth ... DESIGNED.
A Hi-tech alien rotary motor found in a cell ... NOT DESIGNED.
http://afdave.wordpress.com/....ess.com

  
Alan Fox



Posts: 1556
Joined: Aug. 2005

(Permalink) Posted: May 25 2006,03:43   

Quote
The ones you have given me before from Talk Origins were not convincing at all ...


Why does that not surprise me?

  
Russell



Posts: 1082
Joined: April 2005

(Permalink) Posted: May 25 2006,03:56   

Well, I still see nothing substantial enough to sink my teeth into. But Skeptic made one remark in passing that I have to check up on.

Skeptic says    
Quote
It seemed for awhile that punctuated equilibrium would gain some traction, but not so much.  Thats not a case of 'forced fit' exactly, but it did deviate from the accepted theory and faded.
I may be behind the times, I freely admit, but could someone point me to a reference that documents the demise of "punctuated equilibrium"?

I never thought the idea was all that revolutionary, but that it made a lot of sense, and fit both the fossil evidence and the modern understanding of genetics better than Charles Darwin could have been expected to, given what was known prior to 1859.

So what's wrong with it?

As an aside, I think Skeptic asks several very good questions - for an individual trying to understand evolution, as an individual. What rubs people the wrong way is the assumption that, because Skeptic hasn't thought these things all the way through, that no one else has either. The fact that Skeptic has attracted the sympathetic attention of a blatantly anti-intellectual young-earther should give him/her pause, and to say to him/herself "there, but for a modicum of humility and a decent respect for smart people who have spent lifetimes working on this stuff, go I".  But we'll see. If there really is reason to completely abandon the punctuated equilibrium idea, perhaps it is I, not Skeptic, who has paid insufficient attention to smart people working on these questions.

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Tracy P. Hamilton



Posts: 1239
Joined: May 2006

(Permalink) Posted: May 25 2006,03:59   

[quote=skeptic,May 24 2006,22:21][/quote]
Quote
Ok, here's the problem with that statement, minus the purposeless attacks,  the 150 years of evidence is all interpretation within the belief that the theory is true.


Are you aware that there was a period in this 150 years when natural selection was out of favor, and why, and why it came back into favor?  How would that be consistent with a record of interpreting everything as if the theory was true?

Quote
What I'm wondering is if we erase the assumption that the current theory is true and we start over do we eventually come to the same conclusions.


That is exactly what happened in the time period I am talking about.

Quote
I'm trying to get you guys to think objectively because 200 years from now we won't be working with this theory but its descendant and how will that theory differ?


Perhaps it is you who needs to learn a bit more, before suggesting that biologists are close-minded.  For one thing, neutral theory is as important as natural selection.  There may also be: horizontal gene transfer, species selection, and perhaps other mechanisms I can't recall.

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"Following what I just wrote about fitness, you’re taking refuge in what we see in the world."  PaV

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sir_toejam



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(Permalink) Posted: May 25 2006,04:00   

Quote
I may be behind the times, I freely admit, but could someone point me to a reference that documents the demise of "punctuated equilibrium"?


IIRC, this is another area Wes is an expert in.  Check the section on Gould in the Talk Origins archive for a nice rundown.

EDIT:

ahh, yes, here ya go:

http://www.talkorigins.org/faqs/punc-eq.html


 
Quote
species selection


I seem to recall the species selection argument having been rejected decades ago.

I have seen occassional attempts to revive it wrt some specific circumstances, but never saw any real-world support from any experiments.

Have you run across some new arguments?  I have big holes in my net these days.

  
Russell



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(Permalink) Posted: May 25 2006,04:24   

Quote
IIRC, this is another area Wes is an expert in.  Check the section on Gould in the Talk Origins archive for a nice rundown.
Thanks! That is a great resource.

I'm still waiting for Skeptic, or someone, to point me to a reference documenting the demise of PE. Perhaps what Skeptic is referring to is a lot of the misconceptions and hype surrounding PE, including the exaggerated distinction between PE and what Darwin laid out in "Origin of Species".

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Russell



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(Permalink) Posted: May 25 2006,04:28   

By the way - with respect to species selection: how else would you characterize the Homo neanderthalensis vs. Homo sapiens encounter?

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sir_toejam



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(Permalink) Posted: May 25 2006,04:41   

hmm, i think you are unintentionally grouping where you shouldn't.

perhaps another question would make it clearer:

How would you characterize the lion vs. hyena encounter?

occassionally, a large group of hyenas can wipe out a small pride of lions from an area as they compete for food and living space.  sometimes vice versa.

monkeys fight other monkey species that overlap in home range and/or resources.

maybe you prefer more human examples like tribal warfare?

simple competition bewteen individuals, who may or may not travel in groups.  

two similar species like the two hominids you mention would likely overlap in resource utilization at some point; especially if large scale climate changes caused one group to migrate into the other's normal area.

It's still considered selection at an individual by individual level.

If this isn't clear, we could go into more of what was meant by the old concept of species selection, before the more modern interpretation of individual selection was adopted if you like.

I believe that this also is covered somewhere in the TO archives.

do a search on "species selection" and see what pops up.

bottom line:

the reason individual selection is favored over species selection is both theoretical (check out the history of game theory), and observational (we've never observed any instance of selection acting at the species level).

moreover, the species selection idea can get confusing, as the idea of species and/or population level selection existed long before Gould, was rejected and then resurrected by Gould in a slightly different incarnation.

So far as I know, that too has been rejected.  I have yet to see any evidence presented since Gould to support it.

(hence my surprise at seeing it mentioned, and me wondering if I missed something)

as to this:

Quote
I'm still waiting for Skeptic, or someone, to point me to a reference documenting the demise of PE


IIRC, it was more a consesus after much debate that PE didn't actually fit either the theoretical models, northe current observational data, and ever more recent transitional discoveries in the fossil record were also not terribly supportive.

Wes would know better than I if there was a seminal reference during this time period that signified this.

bottom line though, it was simply a matter of parsimony; PE while a well thought out hypothesis, when rigorously examined against current and more recent evidence, simply wasn't needed.  I don't think it ever was "disproven" per sae, just kinda shoved to the back burner.

  
BWE



Posts: 1902
Joined: Jan. 2006

(Permalink) Posted: May 25 2006,05:04   

Quote (Faid @ May 25 2006,04:14)
BWE,
keep your creationist paws off sceptic.
The man is NOT a creo: He clearly stated that in the beginning. He's not of your ignorant kind (with its tell-tale incomprehensible writing): He has studied Biochemistry. He's a scientist, for crying out loud, just a deluded one.
The reason he uses creationist terms like "Darwinism" and creo arguments like the fossil record does not show he's on your side: It just shows how your indoctrination has reached far into the scientific community. And that's why we get more and more respectable scientists in relevant fields submit to the ID propaganda every day.
Sceptic still has a chance to escape their faith. He just has to learn a few truths. After all, that is what is here for; and he's come to the rite place.
Leave him alone, and take your deluded teachings elsewhere. People more educated in these issues -like Thordaddy- would be more willing to discuss with you; but leave the cubs alone.
:angry:

Faid,

It is not me nor is it skeptic who is delusionally propogating the myths of wholesale chaotic structure a la James Gleick and attributing them to the nonlinear aspects of the origins of species in the context of assuming change took infathomable amounts of time to achieve a non-static state that neo-darinians assign to current living structures, all the while ignoring the overwhelming evidence available to those who simply look elsewhere for the causes and consequences of the structures which we witness when we merely remove the evolutionary blinders so disiningenuously applied by institutions of higher learning in America and elsewhere in the world in the transparent hope that Darwinian dogma could become the prevailing worldview and that intelligent debate becomes stifled under the oppressive weight of fancy facts and figures invoked under the moniker of science and validated through palty "experimental" data and "verified" predictions.

So don't tell me. Try looking in the mirror.

--------------
Who said that ev'ry wish would be heard and answered
When wished on the morning star
Somebody thought of that, and someone believed it
Look what it's done so far

The Daily Wingnut

   
Wesley R. Elsberry



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(Permalink) Posted: May 25 2006,05:10   

Faid,

Look up "Loki points" on talkorigins.org. You owe BWE some.

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"You can't teach an old dogma new tricks." - Dorothy Parker

    
Richardthughes



Posts: 11178
Joined: Jan. 2006

(Permalink) Posted: May 25 2006,05:22   

"Is this a convincing 'debunking' for a change?  The ones you have given me before from Talk Origins were not convincing at all ... "


Too sciencey?

--------------
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Faid



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(Permalink) Posted: May 25 2006,05:32   

Quote (Wesley R. Elsberry @ May 25 2006,10:10)
Faid,

Look up "Loki points" on talkorigins.org. You owe BWE some.

(Hey, I know I owe him, that's what I'm trying to make up for!;))

--------------
A look into DAVE HAWKINS' sense of honesty:

"The truth is that ALL mutations REDUCE information"

"...mutations can add information to a genome.  And remember, I have never said that this is not possible."

  
sir_toejam



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(Permalink) Posted: May 25 2006,05:32   

naw, too "truthy".

  
Russell



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(Permalink) Posted: May 25 2006,05:34   

Sir TJ - I don't take issue with anything you said. All I'm saying is that the definition of "species selection" as laid out in Wesley's piece:
Quote
PE asserts "species selection" as the way in which major adaptive trends proceed. Closely related species are often likely to overlap in niche space (5 above). Ecological processes may cause the displacement and possible extinction of certain species due to competition with other species. If adaptive change in large populations is largely inhibited (6 above), then each species represents a "hypothesis" that is "tested" in competition. This is one of the more controversial points in PE.
doesn't seem incompatible with the H. neanderthalensis - H. sapiens story. I.e. are we talking about something deeper than semantics here?

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Must... not... scratch... mosquito bite.

  
BWE



Posts: 1902
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(Permalink) Posted: May 25 2006,05:42   

Faid is most certainly helping to prove my point by spouting off dogmatic plattitudes for darwinian appologists the world around who insist on covering the issue of science with a blanket of obfuscatory experiments, hypotheses, predictions and scientific journal entries in an attempt to bury dissenting opinion beneath a deluge of facts and figures that the darwinian appologist will advise those who have not eaten the pomegranate seeds of evolutionary dogma as the darwinian persephones did to peruse and thoroughly understand before they bring evidence to bear against the opressive regime of darwinian neo-culture.

* last sentence edited- Darn cut and past from word

--------------
Who said that ev'ry wish would be heard and answered
When wished on the morning star
Somebody thought of that, and someone believed it
Look what it's done so far

The Daily Wingnut

   
sir_toejam



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Joined: April 2005

(Permalink) Posted: May 25 2006,05:43   

short answer:

yes.

the long answer will have to wait (I'm heading out the door), and likely would be the topic of a rather long post, actually.

Please forgive me if I don't get around to it today, but do remind me if I forget as it's probably worth a post on its own, as the issue seems to get confused (even by myself on occasion :) ).

In the meantime, I would also recommend seeing if the Berkeley evolution site has some history of the species vs. individual selection arguments to check out, and grab a copy of Futuyma if you can.

  
jeannot



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Joined: Jan. 2006

(Permalink) Posted: May 25 2006,06:20   

Quote (Russell @ May 25 2006,10:34)
Sir TJ - I don't take issue with anything you said. All I'm saying is that the definition of "species selection" as laid out in Wesley's piece:  
Quote
PE asserts "species selection" as the way in which major adaptive trends proceed. Closely related species are often likely to overlap in niche space (5 above). Ecological processes may cause the displacement and possible extinction of certain species due to competition with other species. If adaptive change in large populations is largely inhibited (6 above), then each species represents a "hypothesis" that is "tested" in competition. This is one of the more controversial points in PE.
doesn't seem incompatible with the H. neanderthalensis - H. sapiens story. I.e. are we talking about something deeper than semantics here?

I think we could consider species selection only if species fitness (which remains to be clearly defined) can produce better predictions than those based on inclusive fitness (allelic fitness). I don't think that is the case.
For instance, when the reproduction rate of a gene and the fitness of its bearer conflict, models and observations indicate that the former always outweigh the latter.
It's certainly the same regarding inclusive or individual fitness vs. species fitness. For instance, I study aphids, and lineages often become completely asexual. When there is no forst during winter, asexual forms are selected for their higher reproductive rate (they don't overwinter in eggs for three months, as sexually reproducing lineages do). So, you can very well imagine that, with global warming, these clonal lineages will outcompete the sexual ones. This would lead to the end of the initial species, since species can only be defined for interbreeding individuals. And of course, all these clonal lineages would be killed by the first winter frost.

Am I clear?

  
Ladlergo



Posts: 32
Joined: May 2006

(Permalink) Posted: May 25 2006,06:21   

Quote (skeptic @ May 25 2006,00:31)
It seemed for awhile that punctuated equilibrium would gain some traction, but not so much.  Thats not a case of 'forced fit' exactly, but it did deviate from the accepted theory and faded.

Oh snap!  My biology professors and textbooks were lying to me! They said it can be a way of describing many evolutionary changes!

You show your ignorance when you say that PE is opposed to and was trying to replace current ToE.

(Talking of PE, couldn't endosymbiotic theory and horizontal gene transfer be considered forms of PE?  Massive jumps in the quantity genetic material rather than the slower process of mutation can bring about amazingly rapid change.)

   
Russell



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(Permalink) Posted: May 25 2006,06:39   

Quote
I think we could consider species selection only if species fitness (which remains to be clearly defined) can produce better predictions than those based on inclusive fitness (allelic fitness). I don't think that is the case.
For instance, when the reproduction rate of a gene and the fitness of its bearer conflict, models and observations indicate that the former always outweigh the latter.
This way of looking at it seems to make a clearer distinction between "species selection" and "individual selection", and you can sensibly distinguish between them. In the definition I quoted, I don't see the two as mutually exclusive.

I have seen this discussion framed as "what is the unit of selection: species or individual? And I think the answer to that is individual. But if the issue boils down to "what is a better predictor: the reproduction rate of a gene or the fitness of its bearer?" I would have thought that it would be the latter (which I would visualize as the reproduction rate of a combination of genes). But that's what actual data is for.

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guthrie



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(Permalink) Posted: May 25 2006,06:58   

That talkorigins article on the RAates stuff is the scientific equivalent of nuking someone.

If Skeptic is still reading this thread, heres a paper on Galapagos Finches:
Galapagos finches

  
jeannot



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(Permalink) Posted: May 25 2006,07:15   

Quote (Russell @ May 25 2006,11:39)
This way of looking at it seems to make a clearer distinction between "species selection" and "individual selection", and you can sensibly distinguish between them. In the definition I quoted, I don't see the two as mutually exclusive.

I have seen this discussion framed as "what is the unit of selection: species or individual? And I think the answer to that is individual. But if the issue boils down to "what is a better predictor: the reproduction rate of a gene or the fitness of its bearer?" I would have thought that it would be the latter (which I would visualize as the reproduction rate of a combination of genes). But that's what actual data is for.

Well, the concept of species selection might work as well as indivual or gene selection most of the time. But what's important is to define a concept that always works
That's why this discussion arround the units of selection is completely on topic. If the real units of selection are closer to genes or individual, then there is no need of a 'species selection' concept. Lower level units are more suitable, because we can apply models based on 'harder sciences' (like biochemistry) to their evolution.
In fact, the concept of gene fitness would also be useless if we had the knowledge and computing power to apply equations from quantum mechanics to biology (I think that was Shrodinger's or Eisenberg's dream).

Inclusive fitness is a better predictor than individual fitness. Gene combinations are broken by sexual reproduction. And between two sexual generations, the fitness of any gene and the fitness of its bearer are indistinguishable (a perfect example is parthenogenesis in aphids during summer).
The reproductive rate of individuals can't account for observations like segregation distortion on chromosmes, male sterility and cytoplasmic incompatibilities caused by organelles, sterile castes in social insects (Darwin's big concern), etc.

  
Ladlergo



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(Permalink) Posted: May 25 2006,10:01   

Quote (jeannot @ May 25 2006,13:15)
Gene combinations are borken by sexual

Sorry, I couldn't help but laugh at that part.  It's a bit of humor after smashing my head against a brick wall.

   
BWE



Posts: 1902
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(Permalink) Posted: May 25 2006,10:07   

jeannot says:
Quote
Inclusive fitness is a better predictor than individual fitness. Gene combinations are borken by sexual reproduction. And between two sexual generations, the fitness of any gene and the fitness of its bearer are indistinguishable (a perfect example is parthenogenesis in aphids during summer).
The reproductive rate of individuals can't account for observations like segregation distortion on chromosmes, male sterility and cytoplasmic incompatibilities caused by organelles, sterile castes in social insects (Darwin's big concern), etc.

Borken?

Saying that gene combinations are broken by sexual reproduction is typical darwinist eriudition and utterly glosses over the critical fact that gene combinations are recombined through fertilization and the new combined genes have the potential to be any number of homologous amalgamations of either deliterious or benificial or even neutral and non-functioning progeny capable of expressing themselves in a variety of ways.

--------------
Who said that ev'ry wish would be heard and answered
When wished on the morning star
Somebody thought of that, and someone believed it
Look what it's done so far

The Daily Wingnut

   
jeannot



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(Permalink) Posted: May 25 2006,10:25   

Quote (Ladlergo @ May 25 2006,15:01)
Quote (jeannot @ May 25 2006,13:15)
Gene combinations are borken by sexual

Sorry, I couldn't help but laugh at that part.  It's a bit of humor after smashing my head against a brick wall.

LOL, sorry for the typo. But my English dictionary says nothing about 'borken', (apparently, it's a german word)

  
Ladlergo



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Joined: May 2006

(Permalink) Posted: May 25 2006,10:34   

Quote (jeannot @ May 25 2006,16:25)
 
Quote (Ladlergo @ May 25 2006,15:01)
 
Quote (jeannot @ May 25 2006,13:15)
Gene combinations are borken by sexual

Sorry, I couldn't help but laugh at that part.  It's a bit of humor after smashing my head against a brick wall.

LOL, sorry for the typo. But my English dictionary says nothing about 'borken', (apparently, it's a german word)


   
improvius



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(Permalink) Posted: May 25 2006,10:44   

Edit - Ladlergo beat me to it.

--------------
Quote (afdave @ Oct. 02 2006,18:37)
Many Jews were in comfortable oblivion about Hitler ... until it was too late.
Many scientists will persist in comfortable oblivion about their Creator ... until it is too late.

  
deadman_932



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(Permalink) Posted: May 25 2006,11:44   



Hi Dere, Boys and Girls! I, too, am a graduate of de Hollywood Upstairs School of Biochemistry!!!  Punctuashuns are BUNKtuashuns! De Fossil records have lots of skips but no LINKS!

Seriously, I'm almost sure I saw DaveScot use the same "parallel evolution" line that "skeptic" did. Not that I want to wade through DS' drivel

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AtBC Award for Thoroughness in the Face of Creationism

  
skeptic



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(Permalink) Posted: May 25 2006,17:15   

Well you guys have had a big day, it took me quite a while just to catch up on the posts.

unfortunately, its impossible to address them all, but one in particular I did want to address.

AFDave

I appreciate the civil tone, but I don't want there to be any misunderstandings, I doubt that I could support any of your points, although to be honest I haven't read them all, but based upon your general premise I see no chance of that happening.

Science is man's attempt to understand and explain the world around him through observation and experiment.  That is dependant upon our senses and quantifiable measures.  Mixing the tangible with the intangible is apples and oranges; neither is relavant to the other.  Any attempt to invoke creationism or ID answers none of the measurable questions and adds a needless step.  As I've stated before, if I say God created all life forms what does that get me...nothing, I still want to how and that's the only thing I can attempt to study.  Thats why I think ID is a waste of time.

On a lighter note, I noticed a couple references to neutral theory.  This is something new, anyone out there have a quick summary or a useful link?

  
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